xQTLvisual_eqtl: Box plot with jittered points for showing number and...

In dingruofan/xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Box plot with jittered points for showing number and significance of eQTL associations

Description

Box plot with jittered points for showing number and significance of eQTL associations

Usage

xQTLvisual_eqtl(
  gene,
  geneType = "auto",
  axis_text_size = 1.3,
  axis_title_size = 1.3,
  title_size = 1.4,
  xlab_text = "",
  ylab_text = "",
  title_text = "",
  violin_color = NULL
)

Arguments

gene	(character) gene symbol or gencode id (versioned or unversioned are both supported).
geneType	(character) options: "auto","geneSymbol" or "gencodeId". Default: "auto".
axis_text_size	(numberic) text size of the axis labels
axis_title_size	(numberic) text size of the axis title
title_size	(numberic) text size of the title of the plot
xlab_text	(character) Lable for x-axis
ylab_text	(character) Lable for x-axis
title_text	(character) Title of the plot
violin_color	A character vector of violin plot color

Value

A ggplot object.

Examples

xQTLvisual_eqtl(gene = "KIF15")

dingruofan/xQTLbiolinks documentation built on Feb. 12, 2025, 4:57 a.m.