xQTLvisual_geneExpTissues: Violin plot of distribution of the gene expression profiles...

In dingruofan/xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Violin plot of distribution of the gene expression profiles among multiple tissues.

Description

Violin plot of distribution of the gene expression profiles among multiple tissues.

Usage

xQTLvisual_geneExpTissues(
  gene = "",
  geneType = "auto",
  tissues = "All",
  log10y = FALSE,
  toTissueSite = FALSE,
  axis_text_size = 1.3,
  axis_title_size = 1.3,
  title_size = 1.4,
  xlab_text = "",
  ylab_text = "",
  title_text = ""
)

Arguments

gene	(character) gene symbol or gencode id (versioned or unversioned are both supported).
geneType	(character) options: "auto","geneSymbol" or "gencodeId". Default: "auto".
tissues	A character string or a vector. "All" (default) means that all tissues is included.
log10y	Display values of expression in log scale. Default: FALSE.
toTissueSite	TRUE or FALSE, display all subtissues or tissue Site. Default: TURE.
axis_text_size	(numberic) text size of the axis labels
axis_title_size	(numberic) text size of the axis title
title_size	(numberic) text size of the title of the plot
xlab_text	(character) Lable for x-axis
ylab_text	(character) Lable for x-axis
title_text	(character) Title of the plot

Value

A list containing expression profile and a ggplot object.

Examples

# Display gene expression in specified tissues.
geneExpTissues <- xQTLvisual_geneExpTissues("TP53", tissues=c("Lung", "Brain","Ovary"))

dingruofan/xQTLbiolinks documentation built on Feb. 12, 2025, 4:57 a.m.