xQTLvisual_genesExp: Density plot of expression profiles for multiple genes

In dingruofan/xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Density plot of expression profiles for multiple genes

Description

Density plot of expression profiles for multiple genes

Usage

xQTLvisual_genesExp(
  genes,
  geneType = "auto",
  tissueSiteDetail = "",
  axis_text_size = 1.3,
  axis_title_size = 1.3,
  title_size = 1.4,
  xlab_text = "",
  ylab_text = "",
  title_text = "",
  color_map = "C"
)

Arguments

genes	(character string or a character vector) gene symbol or gencode id (versioned or unversioned are both supported).
geneType	(character) options: "auto","geneSymbol" or "gencodeId". Default: "auto".
tissueSiteDetail	(character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8
axis_text_size	(numberic) text size of the axis labels
axis_title_size	(numberic) text size of the axis title
title_size	(numberic) text size of the title of the plot
xlab_text	(character) Lable for x-axis
ylab_text	(character) Lable for x-axis
title_text	(character) Title of the plot
color_map	A character string indicating the color map option to use. Eight options are available: "A", "B", "C", "D", "E", "F", "G", and "H"

Value

A ggplot object.

Examples

genes <- c("FNDC8", "S100Z", "AQP6", "AMOT", "C3orf38", "FOXL1", "COX11",
           "FCN3", "DDX58", "CFI", "MS4A18", "NUDT13", "HOXA4", "VSX1")
xQTLvisual_genesExp(genes, tissueSiteDetail="Lung")

genes <- c("ENSG00000073598.5","ENSG00000171643.13","ENSG00000086159.12","ENSG00000126016.15",
           "ENSG00000179021.9","ENSG00000176678.5","ENSG00000166260.10","ENSG00000142748.12",
           "ENSG00000107201.9","ENSG00000205403.12","ENSG00000214782.7","ENSG00000166321.13",
           "ENSG00000197576.13","ENSG00000100987.14")
xQTLvisual_genesExp(genes, geneType="gencodeId", tissueSiteDetail="Liver",  axis_text_size=1.6,axis_title_size=1.6, title_size=1.8, xlab_text="xxxx", ylab_text="yyyy", title_text ="tttt", color_map="E")

dingruofan/xQTLbiolinks documentation built on Feb. 12, 2025, 4:57 a.m.