API for dirmeier/knockout
Statistical Analysis of High-Throughput Genetic Perturbation Screens

Global functions
HMAnalysedPerturbationData-class Man page
NetworkAnalysedPerturbationData-class Man page
PerturbationData-class Man page
bootstrap Man page Source code
bootstrap.PerturbationData Source code
bootstrap.tbl_df Source code
check.columns Source code
check.formula Source code
colors Source code
conf.int Source code
dataSet Man page
dataSet,AbstractAnalysedPerturbationData-method Man page
dataSet,PerturbationData-method Man page
diffuse Man page Source code
diffuse,HMAnalysedPerturbationData-method Man page
do.mrw Source code
effect.matrices Source code
effect.matrices.HMAnalysedPerturbationData Source code
filter Man page Source code
filter.PerturbationData Source code
gather.locfdr Source code
ge.fdrs Source code Source code
geneEffects Man page
geneEffects,AbstractAnalysedPerturbationData-method Man page
get.graph Source code
graph Man page
graph,NetworkAnalysedPerturbationData-method Man page
hm Man page Source code
hm,PerturbationData-method Man page
hm.fit Source code
hm.model.data Source code
inference Man page
inference,AbstractAnalysedPerturbationData-method Man page
inferenceTypes Source code
isBootstrapped Man page
isBootstrapped,AbstractAnalysedPerturbationData-method Man page
leuniq Source code
localfdr Source code
loccov Source code
loccov2 Source code
locmle Source code
modelFit Man page
modelFit,HMAnalysedPerturbationData-method Man page
mrw Source code
nestedGeneEffects Man page
nestedGeneEffects,HMAnalysedPerturbationData-method Man page
nge.fdrs Source code
nit.starting.distribution Source code
params Man page
params,AbstractAnalysedPerturbationData-method Man page
perturbatr-package Man page
plot.HMAnalysedPerturbationData Source code
plot.NetworkAnalysedPerturbationData Man page Source code
plot.PerturbationData Man page Source code
plot.bars Source code
plot.bars.diff Source code
plot.effect.matrices.perturbation.analysed.hm Source code
plot.perturbation.hm.analysed Source code
ranef Source code
rbind.PerturbationData Man page Source code
read.graph Source code
requiredDataCols Source code
rnaiscreen Man page
setModelData Man page
setModelData,PerturbationData-method Man page
significance.mrw Source code
dirmeier/knockout documentation built on May 5, 2018, 4:12 a.m.