Files in dirmeier/knockout
Analysis of high-throughput RNAi gene perturbation screens

.Rbuildignore
.gitattributes
.gitignore
.lintr
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/class_knockdown_analysed.R R/class_knockdown_data.R R/class_knockdown_plates.R R/class_knockdown_quality.R R/class_knockdown_replicates.R R/class_methods.R R/data.R R/inference_chisqstatistic.R R/inference_diffuse.R R/inference_diffuse_mrw.R R/inference_hyperstatistic.R R/inference_lmm.R R/inference_lmm_fdr_ge.R R/inference_lmm_fdr_gpe.R R/inference_lmm_model_data.R R/inference_tstatistic.R R/knockdown_package.R R/methods_combine.R R/methods_filter.R R/methods_plates.R R/methods_quality.R R/methods_replicates.R R/methods_select.R R/methods_show.R R/plot.R R/plot_analysed.R R/plot_data.R R/plot_diffusion.R R/plot_other.R R/preprocess.R R/preprocess_background.R R/preprocess_bscore.R R/preprocess_loess.R R/preprocess_log.R R/preprocess_low_viability.R R/preprocess_poc.R R/preprocess_quantile.R R/preprocess_raw_data.R R/preprocess_well_outliers.R R/preprocess_zscore.R R/util_as.R R/util_effect_matrix.R R/util_enums.R R/util_functions.R R/util_graph.R R/util_plate_matrix.R R/util_sampler.R R/util_stat.R R/zzz.R README.md VERSIONS.md
analysis/.gitignore
analysis/1_normalize_data.R analysis/1_normalize_data_plot.R analysis/2_model_selection.R analysis/3_pan_viral_hit_selection.R analysis/3_pan_viral_hit_selection_plot.R analysis/4_predictive_model.R analysis/4_predictive_model_plot.R analysis/4_stability_analysis.R analysis/4_stability_analysis_plot.R analysis/5_network_analysis.R analysis/5_network_analysis_table.R
analysis/Dockerfile
analysis/README.md
analysis/run.sh
code-of-conduct.md
codecov.yml
data/rnaiscreen.rda
inst/NEWS
inst/extdata/graph_file.tsv
inst/figure/sticker.png
man/bootstrap.Rd man/chisq_statisic_knockdown_analysis-class.Rd man/chisq_statistic-methods.Rd man/diffuse-methods.Rd man/diffusion_knockdown_analysis-class.Rd man/filter-methods.Rd man/hyper_knockdown_analysis-class.Rd man/hyper_statistic-methods.Rd man/knockdown-package.Rd man/knockdown_analysis-class.Rd man/knockdown_lmm_data-class.Rd man/knockdown_normalized_data-class.Rd man/knockdown_raw_data-class.Rd man/lmm-methods.Rd man/lmm_knockdown_analysis-class.Rd man/mrw_diffusion_knockdown_analysis-class.Rd man/plates.Rd man/plot.knockdown.diffusion.analysed.Rd man/plot.knockdown.hyper.analysed.Rd man/plot.knockdown.lmm.analysed.Rd man/plot.knockdown.normalized.data.Rd man/plot.knockdown.plate.Rd man/plot.knockdown.quality.Rd man/plot.knockdown.raw.data.Rd man/plot.knockdown.replicate.Rd man/plot.knockdown.tstatistic.analysed.Rd man/preprocess-methods.Rd man/quality.Rd man/replicates.Rd man/rnaiscreen.Rd man/select.Rd man/set.lmm.model.data.Rd man/sub-knockdown.plates-numeric-missing-missing-method.Rd man/subset-methods.Rd man/t_statistic-methods.Rd man/tstatisic_knockdown_analysis-class.Rd tests/testthat.R tests/testthat/test_analysis_chisq.R tests/testthat/test_analysis_lmm.R tests/testthat/test_analysis_rsa.R tests/testthat/test_analysis_ttest.R tests/testthat/test_classes.R tests/testthat/test_methods.R tests/testthat/test_preprocessing.R vignettes/knockdown.Rmd
vignettes/knockdown.bib
dirmeier/knockout documentation built on Nov. 21, 2017, 12:26 p.m.