Files in dirmeier/knockout
Statistical Analysis of High-Throughput Genetic Perturbation Screens

.Rbuildignore
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.lintr
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/class_analysed.R R/class_data.R R/data.R R/inference_diffuse.R R/inference_diffuse_mrw.R R/inference_hyperstatistic.R R/inference_lmm.R R/inference_lmm_fdr.R R/inference_lmm_locfdr.R R/inference_lmm_model_data.R R/inference_test.R R/inference_tstatistic.R R/methods_combine.R R/methods_filter.R R/methods_select.R R/methods_show.R R/perturbatr-package.R R/plot_analysed.R R/plot_data.R R/plot_diffusion.R R/preprocess.R R/preprocess_background.R R/preprocess_bscore.R R/preprocess_loess.R R/preprocess_log.R R/preprocess_low_viability.R R/preprocess_poc.R R/preprocess_raw_data.R R/preprocess_well_outliers.R R/preprocess_zscore.R R/util_as.R R/util_effect_matrix.R R/util_enums.R R/util_functions.R R/util_graph.R R/util_sampler.R R/util_stat.R README.md
analysis/.gitignore
analysis/1a_normalize_data.R analysis/1b_normalize_data_plot.R analysis/2_model_selection.R analysis/3a_pan_viral_hit_selection.R analysis/3b_pan_viral_hit_selection_plot.R analysis/4a_stability_analysis.R analysis/4b_stability_analysis_plot.R analysis/4c_predictive_model.R analysis/4d_predictive_model_plot.R analysis/5a_network_analysis.R analysis/5b_network_analysis_table.R
analysis/Dockerfile
analysis/README.md
analysis/run.sh
code-of-conduct.md
codecov.yml
data/rnaiscreen.rda
inst/NEWS
inst/extdata/graph_file.tsv
inst/figure/sticker.R
inst/figure/sticker.png
man/bootstrap.Rd man/diffuse-methods.Rd man/diffusion_perturbation_analysis-class.Rd man/filter-methods.Rd man/hm-methods.Rd man/hm_perturbation_analysis-class.Rd man/hyper_perturbation_analysis-class.Rd man/hyper_statistic-methods.Rd man/mrw_diffusion_perturbation_analysis-class.Rd man/perturbation_analysis-class.Rd man/perturbation_hm_data-class.Rd man/perturbation_normalized_data-class.Rd man/perturbation_raw_data-class.Rd man/perturbatr-package.Rd man/plot.perturbation.diffusion.analysed.Rd man/plot.perturbation.hyper.analysed.Rd man/plot.perturbation.tstatistic.analysed.Rd man/preprocess-methods.Rd man/rnaiscreen.Rd man/select.Rd man/set.hm.model.data.Rd man/t_statistic-methods.Rd man/tstatisic_perturbation_analysis-class.Rd tests/testthat.R tests/testthat/test_analysis_lmm.R tests/testthat/test_analysis_rsa.R tests/testthat/test_analysis_ttest.R tests/testthat/test_classes.R tests/testthat/test_methods.R vignettes/perturbatr.Rmd
vignettes/perturbatr.bib
dirmeier/knockout documentation built on Feb. 13, 2018, 9:17 p.m.