djwcisel/toast
Transcriptome Ortholog Alignment Sequence Tools

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djwcisel/toast: Transcriptome Ortholog Alignment Sequence Tools
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Man pages for djwcisel/toast
Transcriptome Ortholog Alignment Sequence Tools

CompleteCoverageScrutinize missing data patterns in your sequence data
EntrezDownloadDownload Public Sequence Data
ExtractBuscoSeqsHarvest FASTA Sequences of BUSCO Orthologs and Write to File
MafftOrientAlignAlign BUSCO Orthologs
MissingDataTableUtility for Assessing Missing Data in a Set of FASTA Files
MissingStreambarAssess Data Coverage Across All Loci and Taxa
ParseBuscoResultsAssemble Single Ortholog IDs from BUSCO
PartitionTableUtility for Creating a Partition Table from Fasta Alignments
RunBuscoRun BUSCO to Assign Ortholog Ids
SuperAlignUtility for Creating a RAxML-style Partition Table from Fasta...
ThresholdDataTableUtility for retrieving species sequences givin a missing data...
ThresholdExtractUtility for retrieving species sequences givin a dataframe of...
VisualizeCoverageExplore Global Patterns of Missing Data
VisualizeTaxonomyInteractiveExplore Missing Data Interactively Based on a Hierarchical...
VisualizeThresholdDetermine and Appropriate Missing Data Threshold
djwcisel/toast documentation built on Nov. 4, 2019, 10:55 a.m.

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