ExtractBuscoSeqs: Harvest FASTA Sequences of BUSCO Orthologs and Write to File

In djwcisel/toast: Transcriptome Ortholog Alignment Sequence Tools

Description

Extracts BUSCO IDs found in parsed_busco_results.tsv and writes them to fasta files. Fasta files are named after the BUSCO ID and each sequence is named after the Genus_species

Usage

ExtractBuscoSeqs(busco_table, fasta_dir, extract_dir)

Arguments

busco_table	Resulting dataframe from ParseBuscoResults
fasta_dir	Directory containing matching fasta files for each busco run
extract_dir	Directory to write fasta results to

Author(s)

Dustin J Wcisel, [e-mail]

James Thomas Howard, [e-mail]

Jeffrey A Yoder, [e-mail]

Alex Dornburg, [e-mail]

See Also

?ParseBuscoResults()

Examples

ExtractBuscoSeqs(busco_table = "tsv_file", fasta_dir = "path/to/fasta/directory")

djwcisel/toast documentation built on Nov. 4, 2019, 10:55 a.m.