PartitionTable: Utility for Creating a Partition Table from Fasta Alignments
In djwcisel/toast: Transcriptome Ortholog Alignment Sequence Tools
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/PartitionTable.R
Description
Parse through a directory of FASTA files and writes "table.partition" to working directory
Usage
1
PartitionTable(aligned_dir)
Arguments
aligned_dir
Directory where fasta alignments can be found
Value
Reads through the full table found in folders ./busco_results/run_Busco* and
returns a dataframe of the results
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
1
PartitionTable(aligned_dir, species_list, threshold)
djwcisel/toast documentation built on Nov. 4, 2019, 10:55 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/PartitionTable.R
Description
Parse through a directory of FASTA files and writes "table.partition" to working directory
Usage
1 | PartitionTable(aligned_dir)
|
Arguments
aligned_dir |
Directory where fasta alignments can be found |
Value
Reads through the full table found in folders ./busco_results/run_Busco* and returns a dataframe of the results
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
1 | PartitionTable(aligned_dir, species_list, threshold)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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