VisualizeTaxonomyInteractive: Explore Missing Data Interactively Based on a Hierarchical...
In djwcisel/toast: Transcriptome Ortholog Alignment Sequence Tools
Description
Usage
Arguments
Author(s)
Examples
View source: R/VisualizeTaxonomyInteractive.R
Description
This function allows you generate circlepack plots to assess patterns of missing data at different hierarchical levels interactively
Usage
1
VisualizeTaxonomyInteractive(tsv, taxonomy, threshold)
Arguments
tsv
a data frame of missing data coverage such as the generated “parsed_busco_results.tsv”
taxonomy
user made data.frame of taxonomy levels following the format of cetacean_taxonomy
threshold
cutoff value for minimum number of sequences allowed per taxon
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
1
VisualizeTaxonomyInteractive(tsv, taxonomy, threshold)
djwcisel/toast documentation built on Nov. 4, 2019, 10:55 a.m.
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Description Usage Arguments Author(s) Examples
View source: R/VisualizeTaxonomyInteractive.R
Description
This function allows you generate circlepack plots to assess patterns of missing data at different hierarchical levels interactively
Usage
1 | VisualizeTaxonomyInteractive(tsv, taxonomy, threshold)
|
Arguments
tsv |
a data frame of missing data coverage such as the generated “parsed_busco_results.tsv” |
taxonomy |
user made data.frame of taxonomy levels following the format of cetacean_taxonomy |
threshold |
cutoff value for minimum number of sequences allowed per taxon |
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
1 | VisualizeTaxonomyInteractive(tsv, taxonomy, threshold)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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