VisualizeThreshold: Determine and Appropriate Missing Data Threshold

In djwcisel/toast: Transcriptome Ortholog Alignment Sequence Tools

Description

Graphically assess the impact of a missing data threshold on changes in the distribution of missing data

Usage

VisualizeThreshold(tsv, threshold)

Arguments

tsv	a data frame of missing data coverage such as the generated “parsed_busco_results.tsv”
threshold	cutoff value for minimum number of sequences allowed per taxon

Value

Returns graphic of missing data based on defined threshold

Author(s)

Dustin J Wcisel, [e-mail]

James Thomas Howard, [e-mail]

Jeffrey A Yoder, [e-mail]

Alex Dornburg, [e-mail]

Examples

VisualizeThreshold("parsed_busco_results.tsv", 1000)

djwcisel/toast documentation built on Nov. 4, 2019, 10:55 a.m.