RunBusco: Run BUSCO to Assign Ortholog Ids
In djwcisel/toast: Transcriptome Ortholog Alignment Sequence Tools

This function allows you to run BUSCO and harvest orthologs. Note that this function is limited to linux users as BUSCO will only run on linux

1 2	RunBusco(fasta_dir, toast_dir, path_to_run_busco.py, path_to_orthoDB, threads = 1)

`fasta_dir`	directory of fastas; Genus_species.fasta
`toast_dir`	working directory where busco runs will be placed
`path_to_run_busco.py`	full path where the python script can be found
`threads`	number of threads to use, defaults to 1
`path_to_orthDB`	directory where orthoDB can be found

Runs BUSCO on all fasta sequences in fasta_dir

James Thomas Howard, jthowar3@ncsu.edu

Jeffrey A Yoder, jayoder@ncsu.edu

1 2	RunBusco(fasta_dir = "path/to/fasta/", toast_dir = "/path/to/toast/dir/", path_to_run_busco.py = "path/to/run/busco.py/", path_to_orthoDB = "path/to/orthoDB")