Files in dnzdmrcgl/proActivTest
Estimate Promoter Activity from RNA-Seq data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/PromoterAnnotation-class.R
R/annotation-data-helper.R
R/annotation-data.R
R/data.R
R/estimate-promoter-activity.R
R/junction-read-count.R
README.Rmd
README.md
data/exonReducedRanges.rda
data/intronRanges.annotated.rda
data/promoterCoordinates.rda
data/promoterIdMapping.rda
inst/extdata/star/sample1.junctions
inst/extdata/star/sample2.junctions
inst/extdata/star/sample3.junctions
inst/extdata/star/sample4.junctions
inst/extdata/star/sample5.junctions
inst/extdata/tophat/sample1.bed
inst/extdata/tophat/sample2.bed
inst/extdata/tophat/sample3.bed
inst/extdata/tophat/sample4.bed
inst/extdata/tophat/sample5.bed
man/calculateJunctionReadCounts.Rd
man/calculatePromoterReadCounts.Rd
man/exonReducedRanges.Rd
man/getAbsolutePromoterActivity.Rd
man/getGeneExpression.Rd
man/getRelativePromoterActivity.Rd
man/getUnannotatedReducedExonRanges.Rd
man/intronRanges.annotated.Rd
man/normalizePromoterReadCounts.Rd
man/prepareAnnotatedIntronRanges.Rd
man/prepareAnnotatedReducedExonRanges.Rd
man/preparePromoterCoordinates.Rd
man/preparePromoterIdMapping.Rd
man/promoterCoordinates.Rd
man/promoterIdMapping.Rd
proActivTest.Rproj
