normalizePromoterReadCounts: Normalize promoter read counts using DESeq2
In dnzdmrcgl/proActivTest: Estimate Promoter Activity from RNA-Seq data
Description
Usage
Arguments
Value
Examples
Description
Normalize promoter read counts using DESeq2
Usage
1
normalizePromoterReadCounts(promoterReadCounts)
Arguments
promoterReadCounts
A data.frame object. The number of junction reads
per promoter (rows) for each sample (cols)
Value
A data.frame object. The normalized number of junction reads per
promoter (rows) for each sample (cols) using DESeq2 counts function.
Requires 'DESeq2' package to be installed
Examples
1
2
3
4
## Not run:
normalizedPromoterReadCounts <- normalizePromoterReadCounts(promoterReadCounts)
## End(Not run)
dnzdmrcgl/proActivTest documentation built on June 9, 2019, 10:50 a.m.
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Description Usage Arguments Value Examples
Description
Normalize promoter read counts using DESeq2
Usage
1 | normalizePromoterReadCounts(promoterReadCounts)
|
Arguments
promoterReadCounts |
A data.frame object. The number of junction reads per promoter (rows) for each sample (cols) |
Value
A data.frame object. The normalized number of junction reads per promoter (rows) for each sample (cols) using DESeq2 counts function. Requires 'DESeq2' package to be installed
Examples
1 2 3 4 | ## Not run:
normalizedPromoterReadCounts <- normalizePromoterReadCounts(promoterReadCounts)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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