Description Usage Arguments Value Examples
Get the reduced first exon ranges without metadata for the annotation txdb provided
1 2 | getUnannotatedReducedExonRanges(txdb, species = "Homo_sapiens",
numberOfCores = 1)
|
txdb |
A txdb object. The txdb object of the annotation version for which promoters will be identified |
species |
A character object. The genus and species of the organism to be used in keepStandardChromosomes(). Supported species can be seen with names(genomeStyles()). |
numberOfCores |
A numeric value. The number of cores to be used for reducing first exons of each gene. Defaults to 1 (no parallelization). This parameter will be used argument to mclapply function hence require 'parallel' package to be installed |
A GRanges object. The reduced first exon ranges for each promoter
1 2 3 4 5 6 | ## Not run:
exonReducedRanges <- getUnannotatedReducedExonRanges(txdb,
species = 'Homo_sapiens',
numberOfCores = 1)
## End(Not run)
|
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