getUnannotatedReducedExonRanges: Get the reduced first exon ranges without metadata for the...

Description Usage Arguments Value Examples

Description

Get the reduced first exon ranges without metadata for the annotation txdb provided

Usage

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getUnannotatedReducedExonRanges(txdb, species = "Homo_sapiens",
  numberOfCores = 1)

Arguments

txdb

A txdb object. The txdb object of the annotation version for which promoters will be identified

species

A character object. The genus and species of the organism to be used in keepStandardChromosomes(). Supported species can be seen with names(genomeStyles()).

numberOfCores

A numeric value. The number of cores to be used for reducing first exons of each gene. Defaults to 1 (no parallelization). This parameter will be used argument to mclapply function hence require 'parallel' package to be installed

Value

A GRanges object. The reduced first exon ranges for each promoter

Examples

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## Not run: 
exonReducedRanges <- getUnannotatedReducedExonRanges(txdb,
                                                     species = 'Homo_sapiens',
                                                     numberOfCores = 1)

## End(Not run)

dnzdmrcgl/proActivTest documentation built on June 9, 2019, 10:50 a.m.