finite_pop: Simulating single locus, two allele Mendelian populations...

In doublearon83/pop.gen.sims2: What the Package Does (One Line, Title Case)

Description

finite_pop simulates Mendelian populations over many generations. Specify initial allele frequencies, population size, and the number of generations. The simulation produces each generation of the population by randomly selecting 2N (ND) alleles for N (ND) individuals from a gamete pool based on allele frequencies.

Usage

finite_pop(p1g2, p2g2, alleles, ND, generations)

Arguments

p1g2	Allele 1 frequency
p2g2	Allele 2 frequency
alleles	allele types (use 1 and 2)
ND	Population size
generations	number of generations

Details

finite_pop returns three plots: 1) Allele 1 frequency versus number of generations, 2) Observed and expected heterozygosity versus number of generations, and 3) Wright's F with a loess regression best fit line. It also returns Fisher's exact tests (fisher.test) comparing the observed genotype counts to the expected and initial values.

Examples

finite_pop(0.3,0.7,c(1,2),100,100)

doublearon83/pop.gen.sims2 documentation built on Dec. 20, 2021, 1:10 a.m.