lp: Simulating (large) Mendelian populations

In doublearon83/pop.gen.sims2: What the Package Does (One Line, Title Case)

Description

lp simulates Mendelian populations. Specify allele frequencies and population size. The simulation generates a population with N individuals and 2N alleles by randomly selecting 2N alleles for N individuals from a gamete pool based on allele frequencies.

Usage

lp(p1, p2, alleles, N)

Arguments

p1	Allele 1 frequency
p2	Allele 2 frequency
alleles	allele types (use 1 and 2)
N	Population size

Details

lp returns the allele frequencies, observed and expected heterozygosities, Wright's F, and Fisher's exact tests (fisher.test) comparing the observed genotype counts to the expected and initial values.

Examples

lp(0.3,0.7,c(1,2),100)

doublearon83/pop.gen.sims2 documentation built on Dec. 20, 2021, 1:10 a.m.