non_rand_mating: Simulating non-random mating Mendelian populations

In doublearon83/pop.gen.sims2: What the Package Does (One Line, Title Case)

Description

non_rand_mating simulates non-random mating Mendelian populations by specifying allele frequencies, population size, and outcrossing rate. The simulation generates a parent population with N individuals with 2N alleles by randomly sampling from a gamete pool based on the specified allele frequencies. Then parents are randomly selected to mate where the outcrossing rate determines whether they mate with themselves or another randomly selected individual.

Usage

non_rand_mating(outcrossingrate, p1, p2, alleles, N)

Arguments

outcrossingrate	probability an individual mates with a randomly selected individual from the parent population
p1	Allele 1 frequency
p2	Allele 2 frequency
alleles	allele types (use 1 and 2)
N	Population size

Details

non_rand_mating returns the allele frequencies, observed and expected heterozygosities, Wright's F, and Fisher's exact (fisher.test) tests comparing the observed genotype counts to the expected and initial values.

Examples

non_rand_mating(0.5,0.3,0.7,c(1,2),1000)

doublearon83/pop.gen.sims2 documentation built on Dec. 20, 2021, 1:10 a.m.