Man pages for douglasgscofield/readGenalex
Read, Write, Manipulate and Convert GenAlEx-Format Genotype Files
| addLocus | Add genotype data to an object of class genalex |
| as.data.frame.genalex | Convert class genalex to data frame |
| as.genalex | Convert object to class genalex |
| as.genetics | Convert class genalex object to data frame encoding loci... |
| as.loci.genalex | Convert class genalex object to data frame of class loci from... |
| cbind.genalex | Combine loci from class genalex data sets |
| checkNullAlleles | Check for potential null (non-amplifying) alleles |
| dropLocus | Remove specified loci from data frame of class genalex |
| extra | Return or set the extra data columns of an object of class... |
| genalex | Create new object of class genalex from constituent data |
| getLocus | Return genotype data for specified loci |
| getLocusColumns | Determine numeric column positions occupied by named loci |
| getPopulation | Return genotypes for specified populations |
| is.genalex | Check to see if an object is of class genalex |
| joinGenotypes | Join genotypes encoded as separate alleles into single... |
| ploidy | Return ploidy for object of class genalex |
| printGenotype | Print selected genotypes |
| Qagr_adult_genotypes | Coast live oak (Quercus agrifolia) adult microsatellite... |
| Qagr_pericarp_genotypes | Coast live oak (Quercus agrifolia) pericarp microsatellite... |
| rbind.genalex | Combine class genalex data sets by adding rows |
| readGenalex | Read GenAlEx-format genotypes file |
| readGenalex-deprecated | Deprecated functions in the readGenalex package |
| readGenalexExcel | Read GenAlEx-format genotypes from an Excel worksheet |
| readGenalex-package | Read, manipulate, write and convert GenAlEx-format genotype... |
| reducePloidy | Reduce the ploidy of an object of class genalex |
| reorderLoci | Reorder class genalex genotype columns |
| replaceLocus | Replace genotype data in data frame of class genalex |
| splitGenotypes | Split genotypes encoded like class genotype into separate... |
| summary.genalex | Summarise contents of class genalex data frame |
| writeGenalex | Write GenAlEx-format genotypes to a text file |
| writeGenalexExcel | Write GenAlEx-format genotypes to an Excel worksheet |
| writeGenepop | Write GenAlEx-format genotypes to a text file in Genepop... |
