joinGenotypes: Join genotypes encoded as separate alleles into single...

In douglasgscofield/readGenalex: Read, Write, Manipulate and Convert GenAlEx-Format Genotype Files

Description

Join genotypes encoded as separate alleles into single genotypes like class genotype or class loci

Usage

## S3 method for class 'genalex'
joinGenotypes(x, sep = "/", ...)

## Default S3 method:
joinGenotypes(x, loci, ploidy, sep = "/", ...)

Arguments

x	An object of class genalex, a data frame, or an object that can be coerced to a data frame which contains genotypes with alleles in separate columns, to be joined into character genotypes of the form "101/107", where the "/" is determined by sep.
sep	Separator between alleles
loci	Columns or column names indicating loci to join. When called for an object of class genalex, all loci are joined.
ploidy	Ploidy of the indicated loci. When called for an object of class genalex, ploidy is determined from attributes.
...	Additional arguments, currently ignored

Value

A data frame with allele columns replaced by genotype columns

douglasgscofield/readGenalex documentation built on May 15, 2019, 10:43 a.m.