findROILocation: finds ROI locations in collapsed wcRatio file
In drashley/InvertR: Finds putative inversions in Strand-seq sequencing data

locates putative inversions based on distribution of wcRatios and generates an ROI file

1 2	findROILocation(collapseFile, fileFrequencies, chrState = 0, verbose = TRUE, baselineThreshold = 0.8, elongationPenalty = 3, minReads = 4)

`collapseFile`	Dataframe of collapsed wcRatios
`fileFrequencies`	Bedfile of reads used to calculate wcRatios
`chrState`	Identify ROIs that deviate from chrState
`verbose`	Verbose messages if`TRUE`
`baselineThreshold`	Minimum threshold used to call ROIs from wcRatio file
`elongationPenalty`	Extends roiRowList
`minReads`	Minimimum reads required to call the ROI