Description Usage Arguments Author(s)
Generates single plot of wcRatios for fileFrequencies
1 2 3 4 | plotROIFrequencies(fileLocation, fileName, fileFrequencies, chr, binSize,
startLoc, endLoc, ROIname = "wholeChr", gapfile = 0,
callingThreshold = 0.66, ROI = 0, padding = 0, strand = TRUE,
png = TRUE)
|
fileLocation |
Specifies directory to save file |
fileName |
Unique identifier of input file |
fileFrequencies |
Dataframe of wcRatio used to generate histrogram |
chr |
Genomic coordinate chromosome |
binSize |
The number of reads in each bin used to calculate wcRatio |
startLoc |
Genomic coordinate start position |
endLoc |
Genomic coordinate end position |
ROIname |
Genomic coordinate number |
gapfile |
Input file of gaps to plot |
callingThreshold |
Threshold line used to find ROIs |
ROI |
ROI location table |
padding |
Number of bases to extend beyond genomic coordinates listed in regionTable e.g. [10000] |
strand |
if |
png |
if |
Ashley D. Sanders, Mark Hills
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