plotGaps: Plots gaps in output png

Description Usage Arguments Author(s)

Description

Plots gapfile above histogram in plotROIFrequencies

Usage

1
plotGaps(gapfile, chr, startLoc, endLoc, padding)

Arguments

gapfile

File with gap locations

chr

Genomic coordinate chromosome

startLoc

Genomic coordinate start position

endLoc

Genomic coordinate end position

padding

Number of bases to extend beyond genomic coordinates listed in regionTable

binSize

The number of reads in each bin used to calculate wcRatio

Author(s)

Ashley D. Sanders, Mark Hills


drashley/InvertR documentation built on May 15, 2019, 1:54 p.m.