Files in dravishays/scandal

A framework for single-cell analysis

LICENSE.md R/AllClasses.R R/AllGenerics.R R/analysis-tools.R R/cnv_inference.R R/gene_sets.R R/plotting.R R/preprocess.R R/programs.R R/scandal.R R/utils.R README.md man/PreprocConfig-class.Rd man/PreprocConfig-generics.Rd man/QCResults-class.Rd man/QCResults-generics.Rd man/SCANDAL_G1S_MARKERS.Rd man/SCANDAL_G2M_MARKERS.Rd man/SCANDAL_HOUSEKEEPING_GENES_LIST.Rd man/SCANDAL_IDH_A_AC_MARKERS.Rd man/SCANDAL_IDH_A_G1S_MARKERS.Rd man/SCANDAL_IDH_A_G2M_MARKERS.Rd man/SCANDAL_IDH_A_OC_MARKERS.Rd man/SCANDAL_IDH_A_STEMNESS_MARKERS.Rd man/SCANDAL_IDH_O_AC_MARKERS.Rd man/SCANDAL_IDH_O_G1S_MARKERS.Rd man/SCANDAL_IDH_O_G2M_MARKERS.Rd man/SCANDAL_IDH_O_OC_MARKERS.Rd man/SCANDAL_IDH_O_STEMNESS_MARKERS.Rd man/SCANDAL_MACROPHAGE_MARKERS.Rd man/SCANDAL_OLIGODENDROCYTE_MARKERS.Rd man/ScandalDataSet-generics.Rd man/ScandalDataSet.Rd man/center_matrix.Rd man/compute_complexity.Rd man/load_dataset.Rd man/log_transform.Rd man/preprocess_matrix.Rd man/scandal.Rd man/scandal_cell_complexity_distribution_plot.Rd man/scandal_cluster_markers_density.Rd man/scandal_cna_classify_scores.Rd man/scandal_cna_compute_matrix.Rd man/scandal_cna_compute_scores.Rd man/scandal_cna_infer.Rd man/scandal_complexity_distribution_plot.Rd man/scandal_histogram_plot.Rd man/scandal_inspect_samples.Rd man/scandal_load_data.Rd man/scandal_mean_expression_frequency_plot.Rd man/scandal_mean_housekeeping_expression_plot.Rd man/scandal_plot.Rd man/scandal_plot_qc_metrics.Rd man/scandal_preprocess.Rd man/scandal_programs_of_intra_sample_heterogeneity.Rd man/scandal_quality_control_stats.Rd man/scandal_reduced_dims_plot.Rd man/scandal_save_data.Rd man/scandal_scatter_plot.Rd man/scandal_setup_analysis.Rd man/scandal_tsne_plot.Rd man/scandal_umap_plot.Rd man/scandal_whiskers_plot.Rd tests/testthat.R