scandal_cna_compute_scores: Compute the cell CNA score
In dravishays/scandal: A framework for single-cell analysis
Description
Usage
Arguments
Value
Author(s)
View source: R/cnv_inference.R
Description
Computes the CNA score for each cell which is composed of the CNA
signal (the sum of squares of computed CNAs) and CNA correlation (the pearson's
correlation between the cell CNA profile and the tumor's CNA profile).
Usage
1
2
3
4
5
6
scandal_cna_compute_scores(
object,
cna_matrix = NULL,
hotspot_threshold = 0.9,
verbose = FALSE
)
Arguments
verbose
Value
A tibble with three columns:
CellID
Signal
Correlation
Author(s)
Avishay Spitzer
dravishays/scandal documentation built on Jan. 8, 2020, 1:30 p.m.
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Description Usage Arguments Value Author(s)
View source: R/cnv_inference.R
Description
Computes the CNA score for each cell which is composed of the CNA signal (the sum of squares of computed CNAs) and CNA correlation (the pearson's correlation between the cell CNA profile and the tumor's CNA profile).
Usage
1 2 3 4 5 6 | scandal_cna_compute_scores(
object,
cna_matrix = NULL,
hotspot_threshold = 0.9,
verbose = FALSE
)
|
Arguments
verbose |
Value
A tibble with three columns:
CellID
Signal
Correlation
Author(s)
Avishay Spitzer
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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