scandal_umap_plot: Create a UMAP plot

In dravishays/scandal: A framework for single-cell analysis

Description

This function plots the UMAP coordinates using a scatter plot.

Usage

scandal_umap_plot(
  object,
  umap_labels = NULL,
  legend_name = NULL,
  title = DEFAULT_TITLE(object, "UMAP plot"),
  title_text_size = 20
)

Arguments

object	a ScandalDataSet object.
umap_labels	an optional vector of character labels for each (x, y) point. Used for color coding each point. Default is NULL.
legend_name	the name of the leged. Default is NULL (no label).
title	an optional string for the title of the plot. Default is NULL (no title).
title_text_size	text size of the title. Default is 20.

Value

A ggplot2 object representing the UMAP plot.

Author(s)

Avishay Spitzer

See Also

umap

dravishays/scandal documentation built on Jan. 8, 2020, 1:30 p.m.