scandal_reduced_dims_plot: Create a reduced dimensions plot

In dravishays/scandal: A framework for single-cell analysis

Description

This function plots the reduced dimensions coordinates using a scatter plot.

Usage

scandal_reduced_dims_plot(
  object,
  rdims,
  labels = NULL,
  legend_name = NULL,
  title = DEFAULT_TITLE(object, "Reduced dimensions plot"),
  title_text_size = 20,
  xlab = "dim1",
  ylab = "dim2"
)

Arguments

object	a ScandalDataSet object.
rdims	the name of the reduced dimensions object that will be retrieved from object (using reducedDim method).
labels	an optional vector of character labels for each (x, y) point. Used for color coding each point. Default is NULL.
legend_name	the name of the leged. Default is NULL (no label).
title	an optional string for the title of the plot. Default is NULL (no title).
title_text_size	text size of the title. Default is 20.

Value

A ggplot2 object representing the reduced dimensions plot.

Author(s)

Avishay Spitzer

See Also

umap

dravishays/scandal documentation built on Jan. 8, 2020, 1:30 p.m.