QCResults-class: QCResults class

In dravishays/scandal: A framework for single-cell analysis

Description

An S4 class for storing quality control results.

Usage

QCResults(preprocConfig, cellIDs = c(), geneIDs = c(), statsQC = DataFrame())

## S4 method for signature 'QCResults'
preprocConfig(object)

## S4 method for signature 'QCResults'
cellIDs(object)

## S4 replacement method for signature 'QCResults'
cellIDs(object) <- value

## S4 method for signature 'QCResults'
geneIDs(object)

## S4 replacement method for signature 'QCResults'
geneIDs(object) <- value

## S4 method for signature 'QCResults'
statsQC(object)

## S4 replacement method for signature 'QCResults'
statsQC(object) <- value

## S4 method for signature 'QCResults'
show(object)

Functions

• QCResults: Constructs a new QCResults object.

Slots

preprocConfig

A object of class PreprocConfig.

cellIDs

A character vector of IDs of cells that passed QC.

geneIDs

A character vector of IDs of genes that passe QC.

statsQC

A DataFrame containing statistics gathered through quality control process.

Methods

preprocConfig

Getter for the PreprocConfig object used when creating the quality control result.

cellIDs

Getter for the cell IDs that passed QC.

geneIDs

Getter for the gene IDs that passed QC

statsQC

Getter for the quality control statistics

Author(s)

Avishay Spitzer

dravishays/scandal documentation built on Jan. 8, 2020, 1:30 p.m.