HermannSpermatogenesisData: Obtain the Hermann spermatogenesis data

In drisso/scRNAseq: Collection of Public Single-Cell RNA-Seq Datasets

Description

Obtain the mouse spermatogenesis single-cell RNA-seq data from Hermann et al. (2018).

Usage

HermannSpermatogenesisData(strip = FALSE, location = TRUE)

Arguments

strip	Logical scalar indicating whether to strip the .X notation from the row names.
location	Logical scalar indicating whether genomic coordinates should be returned. Only used if strip=TRUE.

Details

Column metadata contains cell types provided by the data generators at https://data.mendeley.com/datasets/kxd5f8vpt4/1#file-fe79c10b-c42e-472e-9c7e-9a9873d9b3d8.

All data are downloaded from ExperimentHub and cached for local re-use. Specific resources can be retrieved by searching for scRNAseq/hermann-spermatogenesis.

Value

A SingleCellExperiment object with two matrices, containing spliced and unspliced counts, respectively.

Author(s)

Charlotte Soneson

References

Hermann B.P. et al. (2018). The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids. Cell Rep. 25(6), 1650-1667.e8.

Examples

sce <- HermannSpermatogenesisData()

drisso/scRNAseq documentation built on Feb. 16, 2021, 1:18 a.m.