Description Usage Arguments Details Value Author(s) References Examples
View source: R/MessmerESCData.R
Obtain the human embryonic stem cell single-cell RNA-seq data from Messmer et al. (2019).
1 | MessmerESCData(location = TRUE)
|
location |
Logical scalar indicating whether genomic coordinates should be returned. |
Row data contains a single "Length"
field describing the total exonic length of each feature.
Column metadata is provided in the same form as supplied in E-MTAB-6819. This contains information such as the cell phenotype (naive or primed) and the batch of origin. Note that counts for technical replicates have already been summed together.
Count data for ERCC spike-ins are stored in the "ERCC"
entry of the altExps
.
If location=TRUE
, the coordinates of the Ensembl gene models are stored in the rowRanges
of the output.
All data are downloaded from ExperimentHub and cached for local re-use.
Specific resources can be retrieved by searching for scRNAseq/messmer-esc
.
A SingleCellExperiment object with a single matrix of read counts.
Aaron Lun
Messmer T et al. (2019). Transcriptional heterogeneity in naive and primed human pluripotent stem cells at single-cell resolution. Cell Rep 26(4), 815-824.e4
1 | sce <- MessmerESCData()
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.