Description Usage Arguments Details Value Author(s) References Examples
View source: R/BachMammaryData.R
Obtain the mouse mammary gland single-cell RNA-seq data from Bach et al. (2017).
1 2 3 4 | BachMammaryData(
samples = c("NP_1", "NP_2", "G_1", "G_2", "L_1", "L_2", "PI_1", "PI_2"),
location = TRUE
)
|
samples |
A character vector with at least one element, specifying which samples(s) to retrieve. |
location |
Logical scalar indicating whether genomic coordinates should be returned. |
Column metadata is extracted from the sample annotation in GSE106273, and refers to the developmental stage of the mammary gland.
If multiple samples are specified in samples
, the count matrices will be cbind
ed together.
Cells originating from different samples are identifiable by the "Sample"
field in the column metadata.
If location=TRUE
, the coordinates of the Ensembl gene models are stored in the rowRanges
of the output.
All data are downloaded from ExperimentHub and cached for local re-use.
Specific resources can be retrieved by searching for scRNAseq/bach-mammary
.
A SingleCellExperiment object with a single matrix of UMI counts.
Aaron Lun
Bach K et al. (2017). Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing. Nat Commun. 8(1), 2128
1 | sce <- BachMammaryData(samples="NP_1")
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.