alignment2ucsc: Convert an alignment to a ucsc location.
In drmjc/genomics: Genomics related functions.
Description
Usage
Arguments
Value
Author(s)
Description
alignment looks like: name chrom chromStart chromEnd
strand 1 NM_011547 chr13 40727709 40745894 - 2 NM_010791
chr11 101693600 101710444 - 3 NM_013684 chr17 15204872
15222390 +
Usage
1
Arguments
x
an alignment object (see Details)
Value
a ucsc string, eg “chr13:40727709-40745894”
Author(s)
Mark Cowley
drmjc/genomics documentation built on May 15, 2019, 2:22 p.m.
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Description Usage Arguments Value Author(s)
Description
alignment looks like: name chrom chromStart chromEnd strand 1 NM_011547 chr13 40727709 40745894 - 2 NM_010791 chr11 101693600 101710444 - 3 NM_013684 chr17 15204872 15222390 +
Usage
1 |
Arguments
x |
an alignment object (see Details) |
Value
a ucsc string, eg “chr13:40727709-40745894”
Author(s)
Mark Cowley
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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