miRbase.miR2mir: Convert mirbase database Convert the miRbase db (which has...
In drmjc/genomics: Genomics related functions.
Description
Usage
Arguments
Value
Author(s)
Description
Convert mirbase database Convert the miRbase db (which
has one row per precursor miRNA) to have one row per
mature miRNA.
Usage
1
miRbase.miR2mir(mir2miR, collapse = TRUE, sep = " // ")
Arguments
mir2miR
see import.miRbase
collapse
logical: collapse multiple rows into one?
separated by sep
sep
see collapse
Value
a data.frame with columns: “Mature_Acc”,
“Mature_ID”, “Mature_Seq”,
“Precursor_Acc”, “Precursor_ID”,
“Precursor_Status”, “Precursor_Seq”,
“miRBase.order”. This final column indicates if it
was in the Mature1 or Mature2 columns from the original
miRNA file
Author(s)
Mark Cowley, 2009-01-07
drmjc/genomics documentation built on May 15, 2019, 2:22 p.m.
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Description Usage Arguments Value Author(s)
Description
Convert mirbase database Convert the miRbase db (which has one row per precursor miRNA) to have one row per mature miRNA.
Usage
1 | miRbase.miR2mir(mir2miR, collapse = TRUE, sep = " // ")
|
Arguments
mir2miR |
see |
collapse |
logical: collapse multiple rows into one?
separated by |
sep |
see |
Value
a data.frame with columns: “Mature_Acc”,
“Mature_ID”, “Mature_Seq”,
“Precursor_Acc”, “Precursor_ID”,
“Precursor_Status”, “Precursor_Seq”,
“miRBase.order”. This final column indicates if it
was in the Mature1 or Mature2 columns from the original
miRNA file
Author(s)
Mark Cowley, 2009-01-07
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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