import.knowngene: import the knownGene file downloaded manually from UCSC...

In drmjc/genomics: Genomics related functions.

Description

By default it looks in the /biomirror/hgdownload.cse.ucsc.edu/tables for a file called knownGene #name chrom strand txStart txEnd cdsStart cdsEnd <snip> NM_001011874 chr1 - 3174829 3630690 3176369 3630540 <snip> AK035064 chr1 + 3709446 3783878 3709490 3783206 <snip> NM_011283 chr1 - 4304522 4320770 4304977 4313203 <snip> NM_011441 chr1 - 4451317 4456803 4452105 4453796 <snip> <snip>

Usage

  import.knowngene(file = "/biomirror/hgdownload.cse.ucsc.edu/tables/knownGene")

Arguments

file	path to knownGene file

Value

see import.ucsc.file

Author(s)

Mark Cowley, 8 August 2006

drmjc/genomics documentation built on May 15, 2019, 2:22 p.m.