miRNA.align.mir.to.miR: Align miR to mir sequences Sequence based alignment of mature...
In drmjc/genomics: Genomics related functions.
Description
Usage
Arguments
Value
Author(s)
Description
Align miR to mir sequences Sequence based alignment of
mature miR sequences within precursor mir sequences
Usage
1
2
miRNA.align.mir.to.miR(mature.id, mature.seq,
precursor.id, precursor.seq)
Arguments
mature.id
a vector of identifiers for the mature
and precursor
precursor.id
a vector of identifiers for the
mature and precursor miR/mir genes respectively.
mature.seq
a vector of sequences. same length as
each other, and
precursor.seq
a vector of sequences. same length
as each other, and same length as the names
Value
a table of N rows, containing: Mature ID, length of
sequence, Precursor ID, length of sequence, Alignment
score (see ?pairwiseAlignment), start and end coordinates
from within the precursor align.prop is the align start /
precursor length
Author(s)
Mark Cowley, 2009-01-13
drmjc/genomics documentation built on May 15, 2019, 2:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Align miR to mir sequences Sequence based alignment of mature miR sequences within precursor mir sequences
Usage
1 2 | miRNA.align.mir.to.miR(mature.id, mature.seq,
precursor.id, precursor.seq)
|
Arguments
mature.id |
a vector of identifiers for the mature and precursor |
precursor.id |
a vector of identifiers for the mature and precursor miR/mir genes respectively. |
mature.seq |
a vector of sequences. same length as each other, and |
precursor.seq |
a vector of sequences. same length as each other, and same length as the names |
Value
a table of N rows, containing: Mature ID, length of sequence, Precursor ID, length of sequence, Alignment score (see ?pairwiseAlignment), start and end coordinates from within the precursor align.prop is the align start / precursor length
Author(s)
Mark Cowley, 2009-01-13
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.