pStrata: Compute Partial Strata Values

In drostlab/myTAI: Evolutionary Transcriptomics

Compute Partial Strata Values

Description

This function computes the partial TAI or TDI values for all Phylostrata or Divergence Strata.

Usage

pStrata(ExpressionSet)

Arguments

ExpressionSet

a standard PhyloExpressionSet or DivergenceExpressionSet object.

Author(s)

Hajk-Georg Drost

Examples

data(PhyloExpressionSetExample)

# compute partial TAI values for each Phylostratum
partialStrata <- pStrata(PhyloExpressionSetExample)

# show that colSums of pStrata is equavalent to the TAI values
all.equal(colSums(partialStrata),TAI(PhyloExpressionSetExample))

# show that colSums of pStrata is equavalent to colSums of pMatrix(PhyloExpressionSetExample)
all.equal(colSums(partialStrata),colSums(pMatrix(PhyloExpressionSetExample)))

drostlab/myTAI documentation built on April 8, 2024, 8:24 a.m.