rcpp_tei_parallel: rcpp_tei_parallel

In drostlab/myTAI: Evolutionary Transcriptomics

rcpp_tei_parallel

Description

computes the phylogenetically based transcriptome evolutionary index (TEI)

Usage

rcpp_tei_parallel(expression, ps, ncores = 1L)

Arguments

expression	ExpressionSet as sparseMatrix
ps	named Phylostratum
ncores	number of cores

Value

list

Author(s)

Kristian K Ullrich

Examples

## load example sequence data
data("PhyloExpressionSetExample", package="myTAI")
spmat <- as(data.matrix(PhyloExpressionSetExample[,-c(1,2)]), "sparseMatrix")
rownames(spmat) <- PhyloExpressionSetExample$GeneID
ps <- setNames(PhyloExpressionSetExample$Phylostratum, PhyloExpressionSetExample$GeneID)
rcpp_tei_parallel(spmat, ps)

drostlab/myTAI documentation built on April 8, 2024, 8:24 a.m.