true_DEGs_proportion: Proportion of Matched DEGs

In duohongrui/simutils: Common functions used in data simulation and evaluation

Proportion of Matched DEGs

Description

Proportion of Matched DEGs

Usage

true_DEGs_proportion(
  sim_data,
  group,
  group_combn,
  sim_DEGs,
  DEA_method,
  verbose = TRUE
)

Arguments

sim_data	The simulated dataset to be evaluated.
group	Group(or cluster) assignment of every cells in columns of matrix.
group_combn	The combinations of two groups generated by utils::combn() function.
sim_DEGs	A list with xxxvsxxx format of names containing the DEGs of different paired groups.
DEA_method	The method used for differential expression analysis. edgeRQLF, edgeRQLFDetRate, MASTcpmDetRate, MASTcpm, limmatrend and limmavoom.
verbose	Whether the process massages are returned.

duohongrui/simutils documentation built on March 12, 2024, 8:40 p.m.