is_exprs: Accessors for the 'is_exprs' element of an SCESet object.

In dynverse/scaterlegacy: Single-cell analysis toolkit for gene expression data in R

Description

The is_exprs element holds a logical matrix indicating whether or not each observation is above the defined lowerDetectionLimit in the SCESet object. It has the same dimensions as the 'exprs' and 'counts' elements, which hold the transformed expression data and count data, respectively.

Usage

is_exprs(object)

is_exprs(object) <- value

## S4 method for signature 'SCESet'
is_exprs(object)

## S4 replacement method for signature 'SCESet,matrix'
is_exprs(object)<-value

## S4 method for signature 'SCESet'
is_exprs(object)

## S4 replacement method for signature 'SCESet,matrix'
is_exprs(object) <- value

Arguments

object	a SCESet object.
value	an integer matrix

Value

a logical matrix indicating if observations are "expressed" or not

Author(s)

Davis McCarthy

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData = sc_example_counts)
is_exprs(example_sceset)

dynverse/scaterlegacy documentation built on Feb. 17, 2020, 5:07 a.m.