featureControlInfo: featureControlInfo in an SCESet object

In dynverse/scaterlegacy: Single-cell analysis toolkit for gene expression data in R

Description

Each SCESet object stores optional information about the controls in the featureControlInfo slot. These functions can be used to access, replace or modify this information.

Usage

featureControlInfo(object)

featureControlInfo(object) <- value

featureControlInfo.SCESet(object)

## S4 method for signature 'SCESet'
featureControlInfo(object)

## S4 replacement method for signature 'SCESet,AnnotatedDataFrame'
featureControlInfo(object) <- value

Arguments

object	a SCESet object.
value	an AnnotatedDataFrame object, where each row contains information for a single set of control features.

Value

An SCESet object containing new feature control information.

Author(s)

Aaron Lun

Examples

data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
example_sceset <- calculateQCMetrics(example_sceset,
                            feature_controls = list(ERCC = 1:40, Mito=41:50))
featureControlInfo(example_sceset)
featureControlInfo(example_sceset)$IsSpike <- c(TRUE, FALSE)

dynverse/scaterlegacy documentation built on Feb. 17, 2020, 5:07 a.m.