ebi-gene-expression-group/bioconductor-ExpressionAtlas: Search, download and visualise datasets from EMBL-EBI Expression Atlas and Single-Cell Expression Atlas

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object. SingleCellExperiment object is used for Single-Cell Expression Atlas datasets.

install.packages("remotes")
remotes::install_github("ebi-gene-expression-group/bioconductor-ExpressionAtlas")