MakeUnifracData: Calculates the generalized UniFrac distances for an...
In eclarke/eclectic: Miscellaneous functions for bioinformatics data
Description
Usage
Arguments
Value
Description
This involves a random rooting of the tree and rarefaction, which are
non-deterministic. For reproducibility, recommend calling set.seed before this
Usage
1
MakeUnifracData(agg, s, tree, rarefy.depth, alpha = 0.5)
Arguments
agg
agglomerated dataframe
s
sample metadata dataframe
tree
a tree (will root using random node)
alpha
the alpha parameter for GUniFrac
Value
the generalized UniFrac distance matrix for the given alpha
eclarke/eclectic documentation built on May 15, 2019, 7:54 p.m.
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Description Usage Arguments Value
Description
This involves a random rooting of the tree and rarefaction, which are non-deterministic. For reproducibility, recommend calling set.seed before this
Usage
1 | MakeUnifracData(agg, s, tree, rarefy.depth, alpha = 0.5)
|
Arguments
agg |
agglomerated dataframe |
s |
sample metadata dataframe |
tree |
a tree (will root using random node) |
alpha |
the alpha parameter for GUniFrac |
Value
the generalized UniFrac distance matrix for the given alpha
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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