contam_test: Test for an OTU's (inverse) correlation between its abundance...
In eclarke/eclectic: Miscellaneous functions for bioinformatics data
Description
Usage
Arguments
Value
Description
Test for an OTU's (inverse) correlation between its abundance and amplicon concentration.
Usage
1
contam_test(.df, ..., otu = "otu", freq = "freq", conc = "PostPCRConc")
Arguments
.df
the data frame
...
the grouping variables (unquoted), i.e. ExtractionType and SampleType
otu
the column with unique otu names
freq
the column denoting OTU proportional abundance (as string)
conc
the column containing amplicon concentration data
Value
the data frame with correlation results added in for each OTU
eclarke/eclectic documentation built on May 15, 2019, 7:54 p.m.
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Description Usage Arguments Value
Description
Test for an OTU's (inverse) correlation between its abundance and amplicon concentration.
Usage
1 | contam_test(.df, ..., otu = "otu", freq = "freq", conc = "PostPCRConc")
|
Arguments
.df |
the data frame |
... |
the grouping variables (unquoted), i.e. ExtractionType and SampleType |
otu |
the column with unique otu names |
freq |
the column denoting OTU proportional abundance (as string) |
conc |
the column containing amplicon concentration data |
Value
the data frame with correlation results added in for each OTU
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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