tax_climber: Finds the lowest taxonomic rank that isn't NA, stopping at...

In eclarke/eclectic: Miscellaneous functions for bioinformatics data

Description

Finds the lowest taxonomic rank that isn't NA, stopping at 'end'.

Usage

tax_climber(otus, taxonomy, end = "Genus", label = FALSE, sep = ":",
  ranks = qiimer::taxonomic_ranks)

Arguments

otus	the otus to look for
taxonomy	the taxa annotations, with otus as rownames (important!)
end	the lowest desired taxonomic rank
label	label the lowest rank with [kpcofgs]?
sep	separator to use between rank label and rank value
ranks	a character vector of taxonomic ranks, in order

Value

the lowest non-NA taxonomic rank assignment

eclarke/eclectic documentation built on May 15, 2019, 7:54 p.m.