Man pages for eilslabs/ComplexHeatmap
Making Complex Heatmaps
| add.AdditiveUnit | Add heatmaps or row annotations to a heatmap list |
| add_heatmap-dispatch | Method dispatch page for add_heatmap |
| add_heatmap-HeatmapAnnotation-method | Add row annotations or heatmaps as a heatmap list |
| add_heatmap-HeatmapList-method | Add heatmaps and row annotations to the heatmap list |
| add_heatmap-Heatmap-method | Add heatmaps or row annotations as a heatmap list |
| AdditiveUnit | Constructor method for AdditiveUnit class |
| AdditiveUnit-class | An internal class |
| adjust_dend_by_leaf_width | Adjust dendrogram based on width of leaves |
| anno_barplot | Using barplot as annotation |
| anno_boxplot | Using boxplot as annotation |
| anno_density | Using kernel density as annotation |
| anno_histogram | Using histogram as annotation |
| anno_link | Link annotation with labels |
| anno_oncoprint_barplot | Column barplot annotation for oncoPrint |
| anno_points | Using points as annotation |
| annotation_legend_size-HeatmapList-method | Size of the annotation legend viewport |
| anno_text | Using text as annotation |
| ColorMapping | Constructor methods for ColorMapping class |
| ColorMapping-class | Class to map values to colors |
| color_mapping_legend-ColorMapping-method | Draw legend based on color mapping |
| column_anno_barplot | Column annotation which is represented as barplots |
| column_anno_boxplot | Column annotation which is represented as boxplots |
| column_anno_density | Column annotation which is represented as density plot |
| column_anno_histogram | Column annotation which is represented as histogram |
| column_anno_link | Column annotation which is represented as links |
| column_anno_points | Column annotation which is represented as points |
| columnAnnotation | Construct column annotations |
| column_anno_text | Column annotation which is represented as text |
| column_dend-dispatch | Method dispatch page for column_dend |
| column_dend-HeatmapList-method | Get column dendrograms from a heatmap list |
| column_dend-Heatmap-method | Get column dendrograms from a heatmap |
| column_order-dispatch | Method dispatch page for column_order |
| column_order-HeatmapList-method | Get column order from a heatmap list |
| column_order-Heatmap-method | Get column order from a heatmap list |
| ComplexHeatmap-package | Making complex heatmap |
| component_height-dispatch | Method dispatch page for component_height |
| component_height-HeatmapList-method | Height of each heatmap list component |
| component_height-Heatmap-method | Height of each heatmap component |
| component_width-dispatch | Method dispatch page for component_width |
| component_width-HeatmapList-method | Width of each heatmap list component |
| component_width-Heatmap-method | Width of each heatmap component |
| decorate_annotation | Decorate the heatmap annotation |
| decorate_column_dend | Decorate heatmap dendrogram on columns |
| decorate_column_names | Decorate heatmap column names |
| decorate_column_title | Decorate heatmap column title |
| decorate_dend | Decorate the heatmap dendrogram |
| decorate_dimnames | Decorate the heatmap dimension names |
| decorate_heatmap_body | Decorate the heatmap body |
| decorate_row_dend | Decorate heatmap dendrogram on rows |
| decorate_row_names | Decorate heatmap row names |
| decorate_row_title | Decorate heatmap row title |
| decorate_title | Decorate the heatmap title |
| densityHeatmap | Use colors to represent density distribution |
| dist2 | Calculate pairwise distance from a matrix |
| draw_annotation-Heatmap-method | Draw column annotations |
| draw_annotation_legend-HeatmapList-method | Draw legends for all column annotations |
| draw_dend-Heatmap-method | Draw dendrogram on row or column |
| draw_dimnames-Heatmap-method | Draw row names or column names |
| draw-dispatch | Method dispatch page for draw |
| draw-HeatmapAnnotation-method | Draw the heatmap annotations |
| draw_heatmap_body-Heatmap-method | Draw the heatmap body |
| draw_heatmap_legend-HeatmapList-method | Draw legends for all heatmaps |
| draw_heatmap_list-HeatmapList-method | Draw the list of heatmaps |
| draw-HeatmapList-method | Draw a list of heatmaps |
| draw-Heatmap-method | Draw a single heatmap |
| draw-SingleAnnotation-method | Draw the single annotation |
| draw_title-dispatch | Method dispatch page for draw_title |
| draw_title-HeatmapList-method | Draw heatmap list title |
| draw_title-Heatmap-method | Draw heatmap title |
| enhanced_basicplot | Enhanced version of basic barplot and boxplot |
| get_color_mapping_list-HeatmapAnnotation-method | Get a list of color mapping objects |
| get_color_mapping_param_list-HeatmapAnnotation-method | Get a list of color mapping parameters |
| grid.dendrogram | Draw dendrogram under grid system |
| grid.dendrogram2 | Draw dendrogram under grid system |
| Heatmap | Constructor method for Heatmap class |
| HeatmapAnnotation | Constructor method for HeatmapAnnotation class |
| HeatmapAnnotation-class | Class for heatmap annotations |
| Heatmap-class | Class for a single heatmap |
| heatmap_legend_size-HeatmapList-method | Size of the heatmap legend viewport |
| HeatmapList | Constructor method for HeatmapList class |
| HeatmapList-class | Class for a list of heatmaps |
| ht_global_opt | Global graphic options for heatmaps |
| is_abs_unit | Whether the unit object contains absolute unit |
| Legend | Making legend grobs |
| make_column_cluster-Heatmap-method | Make cluster on columns |
| make_layout-dispatch | Method dispatch page for make_layout |
| make_layout-HeatmapList-method | Make layout for the complete plot |
| make_layout-Heatmap-method | Make the layout of a single heatmap |
| make_row_cluster-Heatmap-method | Make cluster on rows |
| map_to_colors-ColorMapping-method | Map values to colors |
| max_text_height | Maximum height of text |
| max_text_width | Maximum width of text |
| oncoPrint | Make oncoPrint |
| packLegend | Pack legends |
| plotDataFrame | Quickly visualize a data frame |
| prepare-Heatmap-method | Prepare the heatmap |
| row_anno_barplot | Row annotation which is represented as barplots |
| row_anno_boxplot | Row annotation which is represented as boxplots |
| row_anno_density | Row annotation which is represented as density plot |
| row_anno_histogram | Row annotation which is represented as histogram |
| row_anno_link | Column annotation which is represented as links |
| row_anno_points | Row annotation which is represented as points |
| rowAnnotation | Construct row annotations |
| row_anno_text | Row annotation which is represented as text |
| row_dend-dispatch | Method dispatch page for row_dend |
| row_dend-HeatmapList-method | Get row dendrograms from a heatmap list |
| row_dend-Heatmap-method | Get row dendrograms from a heatmap |
| row_order-dispatch | Method dispatch page for row_order |
| row_order-HeatmapList-method | Get row order from a heatmap list |
| row_order-Heatmap-method | Get row order from a heatmap |
| selectArea | Select an area in the heatmap |
| set_component_height-Heatmap-method | Set height of each heatmap component |
| show-ColorMapping-method | Print ColorMapping object |
| show-dispatch | Method dispatch page for show |
| show-HeatmapAnnotation-method | Print the Heatmap Annotation object |
| show-HeatmapList-method | Draw a list of heatmaps with default parameters |
| show-Heatmap-method | Draw the single heatmap with default parameters |
| show-SingleAnnotation-method | Print the SingleAnnotation object |
| SingleAnnotation | Constructor method for SingleAnnotation class |
| SingleAnnotation-class | Class for a single annotation |
| unify_mat_list | Unify a list of matrix |
