enhanced_basicplot: Enhanced version of basic barplot and boxplot

In eilslabs/ComplexHeatmap: Making Complex Heatmaps

Description

Enhanced version of basic barplot and boxplot

Usage

enhanced_basicplot(data, ..., ylim = NULL,
    ylab = deparse(substitute(data)), title = NULL, title_gp = gpar(fontsize = 14),
    type = c("boxplot", "barplot"), width = 0.8, gp = gpar(),
    pch = 1, size = unit(2, "mm"), axis_gp = gpar(fontsize = 8),
    padding = unit(c(2, 18, 2, 2), "mm"),
    heatmap_legend_list = list())

Arguments

data	a matrix, a list or a simple numeric vector. If your data is a data frame please convert it to a matrix in the first place.
...	pass to Heatmap
ylim	ranges on y axis
ylab	label on y axis
title	title of the plot
title_gp	graphic parameters for the title
type	type of the plot
width	relative width of the bar or box
gp	graphic parameters for hte bar or box
pch	shape of outlier points in the boxplot
size	size of hte outlier points in the boxplot
axis_gp	graphic parameters for the axis
padding	padding of the plot
heatmap_legend_list	a list of grob which contains legend. It can be generated by color_mapping_legend,ColorMapping-method.

Details

This function adds annotations to the barplot or boxplot.

This function is still quite experimental.

Value

No value is returned

Author(s)

Zuguang Gu <[e-mail]>

Examples

mat = matrix(runif(100), 10)
enhanced_basicplot(mat)
ha = HeatmapAnnotation(char = sample(letters[1:2], 10, replace = TRUE),
                       num = runif(10))
enhanced_basicplot(mat, top_annotation = ha)
enhanced_basicplot(mat, type = "barplot", top_annotation = ha)

eilslabs/ComplexHeatmap documentation built on May 16, 2019, 1:21 a.m.