anno_boxplot: Using boxplot as annotation
In eilslabs/ComplexHeatmap: Making Complex Heatmaps

Description Usage Arguments Value Author(s) Examples

Using boxplot as annotation

anno_boxplot(x, which = c("column", "row"), border = TRUE,
    gp = gpar(fill = "#CCCCCC"), ylim = NULL, outline = TRUE,
    pch = 16, size = unit(2, "mm"), axis = FALSE, axis_side = NULL,
    axis_gp = gpar(fontsize = 8), axis_direction = c("normal", "reverse"))

`x`	a matrix or a list. If `x` is a matrix and if `which` is `column`, statistics for boxplot is calculated by columns, if `which` is `row`, the calculation is by rows.
`which`	is the annotation a column annotation or a row annotation?
`border`	whether show border of the annotation compoment
`gp`	graphic parameters
`ylim`	data ranges.
`outline`	whether draw outliers
`pch`	point type
`size`	point size
`axis`	whether add axis
`axis_side`	if it is placed as column annotation, value can only be "left" or "right". If it is placed as row annotation, value can only be "bottom" or "top".
`axis_gp`	graphic parameters for axis
`axis_direction`	if the annotation is row annotation, should the axis be from left to right (default) or follow the reversed direction?

A graphic function which can be set in HeatmapAnnotation constructor method.

Zuguang Gu <z.gu@dkfz.de>

mat = matrix(rnorm(32), nrow = 4)
f = anno_boxplot(mat)
grid.newpage(); f(1:8)

f = anno_boxplot(mat, which = "row")
grid.newpage(); f(1:4)

lt = lapply(1:4, function(i) rnorm(8))
f = anno_boxplot(lt)
grid.newpage(); f(1:4)