make_layout-HeatmapList-method: Make layout for the complete plot
In eilslabs/ComplexHeatmap: Making Complex Heatmaps

Description Usage Arguments Details Value Author(s) Examples

Make layout for the complete plot

## S4 method for signature 'HeatmapList'
make_layout(object, row_title = character(0),
    row_title_side = c("left", "right"),
    row_title_gp = gpar(fontsize = 14),
    column_title = character(0),
    column_title_side = c("top", "bottom"),
    column_title_gp = gpar(fontsize = 14),
    heatmap_legend_side = c("right", "left", "bottom", "top"),
    merge_legends = FALSE,
    show_heatmap_legend = TRUE,
    heatmap_legend_list = list(),
    annotation_legend_side = c("right", "left", "bottom", "top"),
    show_annotation_legend = TRUE,
    annotation_legend_list = list(),
    gap = unit(3, "mm"),
    main_heatmap = which(sapply(object@ht_list, inherits, "Heatmap"))[1],
    row_dend_side = c("original", "left", "right"),
    row_hclust_side = row_dend_side,
    row_sub_title_side = c("original", "left", "right"),
    cluster_rows = NULL,
    clustering_distance_rows = NULL,
    clustering_method_rows = NULL,
    row_dend_width = NULL,
    show_row_dend = NULL,
    row_dend_reorder = NULL,
    row_dend_gp = NULL,
    row_order = NULL,
    km = NULL,
    split = NULL,
    combined_name_fun = NULL)

`object`	a `HeatmapList-class` object.
`row_title`	title on the row.
`row_title_side`	will the title be put on the left or right of the heatmap.
`row_title_gp`	graphic parameters for drawing text.
`column_title`	title on the column.
`column_title_side`	will the title be put on the top or bottom of the heatmap.
`column_title_gp`	graphic parameters for drawing text.
`heatmap_legend_side`	side of the heatmap legend.
`merge_legends`	whether put heatmap legends and annotation legends in a same column
`show_heatmap_legend`	whether show heatmap legend.
`heatmap_legend_list`	a list of self-defined legend, should be wrapped into `grob` objects.
`annotation_legend_side`	side of annotation legend.
`show_annotation_legend`	whether show annotation legend.
`annotation_legend_list`	a list of self-defined legend, should be wrapped into `grob` objects.
`gap`	gap between heatmaps, should be a `unit` object.
`main_heatmap`	name or index for the main heatmap
`row_dend_side`	if auto adjust, where to put the row dendrograms for the main heatmap
`row_hclust_side`	deprecated, use `row_dend_side` instead
`row_sub_title_side`	if auto adjust, where to put sub row titles for the main heatmap
`cluster_rows`	same setting as in `Heatmap`, if it is specified, `cluster_rows` in main heatmap is ignored.
`clustering_distance_rows`	same setting as in `Heatmap`, if it is specified, `clustering_distance_rows` in main heatmap is ignored.
`clustering_method_rows`	same setting as in `Heatmap`, if it is specified, `clustering_method_rows` in main heatmap is ignored.
`row_dend_width`	same setting as in `Heatmap`, if it is specified, `row_dend_width` in main heatmap is ignored.
`show_row_dend`	same setting as in `Heatmap`, if it is specified, `show_row_dend` in main heatmap is ignored.
`row_dend_reorder`	same setting as in `Heatmap`, if it is specified, `row_dend_reorder` in main heatmap is ignored.
`row_dend_gp`	same setting as in `Heatmap`, if it is specified, `row_dend_gp` in main heatmap is ignored.
`row_order`	same setting as in `Heatmap`, if it is specified, `row_order` in main heatmap is ignored.
`km`	same setting as in `Heatmap`, if it is specified, `km` in main heatmap is ignored.
`split`	same setting as in `Heatmap`, if it is specified, `split` in main heatmap is ignored.
`combined_name_fun`	same setting as in `Heatmap`, if it is specified, `combined_name_fun` in main heatmap is ignored.