Description Usage Arguments Details References Examples
Highlight chromosomes
1 |
... |
pass to |
This is only a shortcut function of highlight.sector
.
Gu, Z. (2014) circlize implements and enhances circular visualization in R. Bioinformatics.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | ## Not run:
par(mar = c(1.5, 1.5, 1.5, 1.5))
# highlight
circos.par("track.height" = 0.1, cell.padding = c(0, 0, 0, 0))
circos.initializeWithIdeogram(plotType = c("axis", "labels"))
bed = generateRandomBed(nr = 100)
circos.genomicTrackPlotRegion(bed, panel.fun = function(region, value, ...) {
circos.genomicPoints(region, value, pch = 16, cex = 0.5, ...)
})
bed = generateRandomBed(nr = 100)
circos.genomicTrackPlotRegion(bed, panel.fun = function(region, value, ...) {
circos.genomicPoints(region, value, pch = 16, cex = 0.5, ...)
})
bed = generateRandomBed(nr = 100)
circos.genomicTrackPlotRegion(bed, panel.fun = function(region, value, ...) {
circos.genomicPoints(region, value, pch = 16, cex = 0.5, ...)
})
bed = generateRandomBed(nr = 100)
circos.genomicTrackPlotRegion(bed, panel.fun = function(region, value, ...) {
circos.genomicPoints(region, value, pch = 16, cex = 0.5, ...)
})
highlight.chromosome("chr1", col = "#FF000040", padding = c(0.05, 0.05, 0.15, 0.05))
highlight.chromosome("chr3", col = NA, border = "red", lwd = 2,
padding = c(0.05, 0.05, 0.15, 0.05))
highlight.chromosome("chr5", col = "#0000FF40", track.index = c(2, 4, 5))
highlight.chromosome("chr7", col = NA, border = "green", lwd = 2,
track.index = c(2, 4, 5))
circos.clear()
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.