Man pages for elmerfer/MIXTURE
MIXTURE: a nu-SVR based recursive feature extraction mdoel with noise constraints for molecular signature deconvolution of bulk tumor tissues
| clustHeatmap | clustHeatmap: Generate Heatmap of Cluster Coefficients |
| dot-MIXER | .MIXER this is the main core function, it should not be... |
| GetCellTypes | GetCellTypes returns the Root Mean Square Error between y -... |
| GetCorrelation | GetCorrelation returns the Correlation 'cor(Y,XB)'... |
| GetMetrics | GetMetrix returns the Root Mean Square Error between y - XB,... |
| GetMixture | GetMixture returns the regresssion coefficient matrix B as... |
| GetPvalues | GetPvalues returns the p values matrix. |
| GetRMSE | GetRMSE returns the Root Mean Square Error between y - XB,... |
| GetUsedGenes | GetUsedGenes return the amount of signature genes in common... |
| ImmuCC | immuCC |
| LM22 | LM22 |
| LoadMixtureResultsFromExcel | LoadMixtureResultsFromExcel This function load a MIXTURE... |
| MIXTURE | MIXTURE |
| nu.svm.robust.RFE | nu.svm.robust.RFE noise constrained & recursive feature... |
| PlotDimCoef | PlotDimCoef: Plot Dimensional Reduction with Cluster... |
| Predict | Predict This function will predict the profile of the... |
| ProportionPlot | ProportionPlot a bar plot for each subject displaying the... |
| SaveExcel | SaveExcel It saves MIXTURE results as an Excel xlsx file |
| scIdent | scIdent: Deconvolve Pseudobulk Samples from Single-Cell... |
| scIdent_MIXTURE | scIdent_MIXTURE |
| SelfTest | SeflTest This function performe the Self Test, which means... |
| SimulatedMixtures | SimulatedMixtures |
| SimulationTest | SimulationTest |
| TIL10 | TIL10 |
| TIL9 | TIL9 |
