dot-MIXER: .MIXER this is the main core function, it should not be...

In elmerfer/MIXTURE: MIXTURE: a nu-SVR based recursive feature extraction mdoel with noise constraints for molecular signature deconvolution of bulk tumor tissues

.MIXER this is the main core function, it should not be called by users

Description

.MIXER this is the main core function, it should not be called by users

Usage

.MIXER(
  expressionMatrix,
  signatureMatrix,
  functionMixture,
  useCores = 1L,
  verbose = FALSE
)

Arguments

expressionMatrix	a GxS gene expression matrix. with row names genes ID as in the signature Matrix. Genes in rows, samples in columns
signatureMatrix	a NxL gene signature matrix for L cell types
functionMixture	: the deconvolution function: cibersort, nu.svm.robust.RFE, ls.rfe.abbas (tiped without quotation marks)
useCores	: (integer) the number of cpus to use.

elmerfer/MIXTURE documentation built on Aug. 20, 2024, 8:03 p.m.